IL_6UO1_133

3D structure

PDB id

6UO1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

6UO1|1|1a|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6UO1_133 not in the Motif Atlas

Homologous match to IL_5J7L_026

Geometric discrepancy: 0.1143

The information below is about IL_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

6UO1|1|1a|C|569
6UO1|1|1a|G|570
6UO1|1|1a|U|571
6UO1|1|1a|A|572
6UO1|1|1a|A|573
6UO1|1|1a|A|574
6UO1|1|1a|G|575
*
6UO1|1|1a|C|880
6UO1|1|1a|G|881

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1e

30S ribosomal protein S5

Chain 1l

30S ribosomal protein S12

Chain 1q

30S ribosomal protein S17