3D structure

PDB id
6UO1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.95 Å

Loop

Sequence
UGCAU*AUG
Length
8 nucleotides
Bulged bases
6UO1|1|1a|C|1054
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6UO1_153 not in the Motif Atlas
Geometric match to IL_4LFB_044
Geometric discrepancy: 0.1059
The information below is about IL_4LFB_044
Detailed Annotation
Isolated cWS basepair
Broad Annotation
No text annotation
Motif group
IL_76319.5
Basepair signature
cWW-L-R-L-cWW
Number of instances in this motif group
3

Unit IDs

6UO1|1|1a|U|1052
6UO1|1|1a|G|1053
6UO1|1|1a|C|1054
6UO1|1|1a|A|1055
6UO1|1|1a|U|1056
*
6UO1|1|1a|A|1204
6UO1|1|1a|U|1205
6UO1|1|1a|G|1206

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1c
30S ribosomal protein S3
Chain 1j
30S ribosomal protein S10
Chain 1n
30S ribosomal protein S14 type Z
Chain 1v
mRNA
Chain 1w
Transfer RNA; tRNA

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