IL_6UO1_162
3D structure
- PDB id
- 6UO1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- CCAC*GGAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6UO1_162 not in the Motif Atlas
- Geometric match to IL_5J7L_256
- Geometric discrepancy: 0.276
- The information below is about IL_5J7L_256
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.15
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 34
Unit IDs
6UO1|1|1a|C|1259
6UO1|1|1a|C|1260
6UO1|1|1a|A|1261
6UO1|1|1a|C|1262
*
6UO1|1|1a|G|1273
6UO1|1|1a|G|1274
6UO1|1|1a|A|1275
6UO1|1|1a|G|1276
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1u
- 30S ribosomal protein Thx
Coloring options: