IL_6UO1_171
3D structure
- PDB id
- 6UO1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- CGGGAG*CAG
- Length
- 9 nucleotides
- Bulged bases
- 6UO1|1|1a|G|1442|||A
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6UO1_171 not in the Motif Atlas
- Homologous match to IL_6CZR_172
- Geometric discrepancy: 0.1477
- The information below is about IL_6CZR_172
- Detailed Annotation
- Isolated basepair with bulged bases
- Broad Annotation
- Isolated basepair with bulged bases
- Motif group
- IL_97255.3
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
6UO1|1|1a|C|1440
6UO1|1|1a|G|1441
6UO1|1|1a|G|1442
6UO1|1|1a|G|1442|||A
6UO1|1|1a|A|1442|||B
6UO1|1|1a|G|1443
*
6UO1|1|1a|C|1459
6UO1|1|1a|A|1460
6UO1|1|1a|G|1461
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1T
- 50S ribosomal protein L19
- Chain 1t
- 30S ribosomal protein S20
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