IL_6UO1_207

3D structure

PDB id

6UO1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CUAAGUG*CUUAAG

Length

13 nucleotides

Bulged bases

6UO1|1|2A|U|1142, 6UO1|1|2A|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6UO1_207 not in the Motif Atlas

Geometric match to IL_4WF9_039

Geometric discrepancy: 0.1205

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

6UO1|1|2A|C|1018
6UO1|1|2A|U|1019
6UO1|1|2A|A|1020
6UO1|1|2A|A|1021
6UO1|1|2A|G|1022
6UO1|1|2A|U|1023
6UO1|1|2A|G|1024
*
6UO1|1|2A|C|1140
6UO1|1|2A|U|1141
6UO1|1|2A|U|1142
6UO1|1|2A|A|1142|||A
6UO1|1|2A|A|1143
6UO1|1|2A|G|1144

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6

Chain 2N

50S ribosomal protein L13