IL_6UO1_244

3D structure

PDB id

6UO1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

ACGA*UCUAU

Length

9 nucleotides

Bulged bases

6UO1|1|2A|C|2055, 6UO1|1|2A|C|2612, 6UO1|1|2A|U|2613

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6UO1_244 not in the Motif Atlas

Homologous match to IL_9DFE_079

Geometric discrepancy: 0.102

The information below is about IL_9DFE_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70335.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6UO1|1|2A|A|2054
6UO1|1|2A|C|2055
6UO1|1|2A|G|2056
6UO1|1|2A|A|2057
*
6UO1|1|2A|U|2611
6UO1|1|2A|C|2612
6UO1|1|2A|U|2613
6UO1|1|2A|A|2614
6UO1|1|2A|U|2615

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 2E

50S ribosomal protein L3

Chain 2W

50S ribosomal protein L22