IL_6UO1_268
3D structure
- PDB id
- 6UO1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- CCUAGUAC*GGACCGG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6UO1_268 not in the Motif Atlas
- Geometric match to IL_5J7L_289
- Geometric discrepancy: 0.3912
- The information below is about IL_5J7L_289
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6UO1|1|2A|C|2651
6UO1|1|2A|C|2652
6UO1|1|2A|U|2653
6UO1|1|2A|A|2654
6UO1|1|2A|G|2655
6UO1|1|2A|U|2656
6UO1|1|2A|A|2657
6UO1|1|2A|C|2658
*
6UO1|1|2A|G|2663
6UO1|1|2A|G|2664
6UO1|1|2A|A|2665
6UO1|1|2A|C|2666
6UO1|1|2A|C|2667
6UO1|1|2A|G|2668
6UO1|1|2A|G|2669
Current chains
- Chain 2A
- 23S Ribosomal RNA
Nearby chains
- Chain 2H
- 50S ribosomal protein L6
Coloring options: