IL_6UO1_298

3D structure

PDB id

6UO1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

6UO1|1|2a|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6UO1_298 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1244

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

6UO1|1|2a|G|409
6UO1|1|2a|G|410
6UO1|1|2a|A|411
6UO1|1|2a|A|412
6UO1|1|2a|G|413
6UO1|1|2a|A|414
6UO1|1|2a|A|415
6UO1|1|2a|G|416
*
6UO1|1|2a|U|427
6UO1|1|2a|G|428
6UO1|1|2a|U|429
6UO1|1|2a|A|430
6UO1|1|2a|A|431
6UO1|1|2a|A|432
6UO1|1|2a|C|433

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4