IL_6UO1_366

3D structure

PDB id

6UO1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GGAGUAG*CGCAGAUACC

Length

17 nucleotides

Bulged bases

6UO1|1|2a|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6UO1_366 not in the Motif Atlas

Geometric match to IL_4V88_508

Geometric discrepancy: 0.2515

The information below is about IL_4V88_508

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_99095.1

Basepair signature

cWW-tSS-L-tSH-L-R-R-R-L-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

6UO1|1|2a|G|682
6UO1|1|2a|G|683
6UO1|1|2a|A|684
6UO1|1|2a|G|685
6UO1|1|2a|U|686
6UO1|1|2a|A|687
6UO1|1|2a|G|688
*
6UO1|1|2a|C|699
6UO1|1|2a|G|700
6UO1|1|2a|C|701
6UO1|1|2a|A|702
6UO1|1|2a|G|703
6UO1|1|2a|A|704
6UO1|1|2a|U|705
6UO1|1|2a|A|706
6UO1|1|2a|C|707
6UO1|1|2a|C|708

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2k

30S ribosomal protein S11

Chain 2r

30S ribosomal protein S18