IL_6UZ7_025

3D structure

PDB id

6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

K.lactis 80S ribosome with p/PE tRNA and eIF5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAUACA*UGUAAUU

Length

13 nucleotides

Bulged bases

6UZ7|1|2|A|505

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6UZ7_025 not in the Motif Atlas

Geometric match to IL_6O5F_001

Geometric discrepancy: 0.3515

The information below is about IL_6O5F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

6UZ7|1|2|G|479
6UZ7|1|2|A|480
6UZ7|1|2|U|481
6UZ7|1|2|A|482
6UZ7|1|2|C|483
6UZ7|1|2|A|484
*
6UZ7|1|2|U|501
6UZ7|1|2|G|502
6UZ7|1|2|U|503
6UZ7|1|2|A|504
6UZ7|1|2|A|505
6UZ7|1|2|U|506
6UZ7|1|2|U|507

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

KLLA0E23673p

Chain e

40S ribosomal protein S30