IL_6UZ7_050

3D structure

PDB id

6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

K.lactis 80S ribosome with p/PE tRNA and eIF5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCU*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6UZ7_050 not in the Motif Atlas

Homologous match to IL_4V88_444

Geometric discrepancy: 0.196

The information below is about IL_4V88_444

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6UZ7|1|2|C|1172
6UZ7|1|2|C|1173
6UZ7|1|2|U|1174
*
6UZ7|1|2|G|1462
6UZ7|1|2|C|1463
6UZ7|1|2|G|1464

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 3

Transfer RNA; tRNA

Chain Q

40S ribosomal protein S16

Chain S

KLLA0B01562p

Chain T

KLLA0A07194p

Chain U

KLLA0F25542p