IL_6UZ7_053

3D structure

PDB id

6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

K.lactis 80S ribosome with p/PE tRNA and eIF5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

6UZ7|1|2|U|1268

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6UZ7_053 not in the Motif Atlas

Homologous match to IL_4V88_449

Geometric discrepancy: 0.2717

The information below is about IL_4V88_449

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6UZ7|1|2|G|1267
6UZ7|1|2|U|1268
6UZ7|1|2|G|1269
*
6UZ7|1|2|C|1438
6UZ7|1|2|C|1439

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain K

KLLA0B08173p

Chain d

40S ribosomal protein S29