IL_6UZ7_054

3D structure

PDB id

6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

K.lactis 80S ribosome with p/PE tRNA and eIF5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

6UZ7|1|2|C|1273

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6UZ7_054 not in the Motif Atlas

Homologous match to IL_4V88_450

Geometric discrepancy: 0.2125

The information below is about IL_4V88_450

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_76319.2

Basepair signature

cWW-L-cWS-cWW

Number of instances in this motif group

4

Unit IDs

6UZ7|1|2|U|1271
6UZ7|1|2|G|1272
6UZ7|1|2|C|1273
6UZ7|1|2|A|1274
6UZ7|1|2|U|1275
*
6UZ7|1|2|A|1434
6UZ7|1|2|U|1435
6UZ7|1|2|G|1436

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

KLLA0D08305p

Chain K

KLLA0B08173p

Chain U

KLLA0F25542p

Chain d

40S ribosomal protein S29