IL_6UZ7_085

3D structure

PDB id

6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

K.lactis 80S ribosome with p/PE tRNA and eIF5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AU*AGUUGU

Length

8 nucleotides

Bulged bases

6UZ7|1|5|U|147

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6UZ7_085 not in the Motif Atlas

Homologous match to IL_8C3A_007

Geometric discrepancy: 0.1384

The information below is about IL_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_19724.3

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

6UZ7|1|5|A|123
6UZ7|1|5|U|124
*
6UZ7|1|5|A|144
6UZ7|1|5|G|145
6UZ7|1|5|U|146
6UZ7|1|5|U|147
6UZ7|1|5|G|148
6UZ7|1|5|U|149

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain AG

KLLA0E00573p

Chain AN

Ribosomal protein L15