IL_6UZ7_089

3D structure

PDB id

6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

K.lactis 80S ribosome with p/PE tRNA and eIF5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GU*AUCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6UZ7_089 not in the Motif Atlas

Geometric match to IL_4YAZ_007

Geometric discrepancy: 0.2875

The information below is about IL_4YAZ_007

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.4

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

6UZ7|1|5|G|177
6UZ7|1|5|U|178
*
6UZ7|1|5|A|238
6UZ7|1|5|U|239
6UZ7|1|5|C|240
6UZ7|1|5|C|241

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain AL

60S ribosomal protein L13

Chain Bh

KLLA0F05247p

Chain Bj

Ribosomal protein L37