IL_6UZ7_104

3D structure

PDB id

6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

K.lactis 80S ribosome with p/PE tRNA and eIF5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6UZ7_104 not in the Motif Atlas

Homologous match to IL_8C3A_028

Geometric discrepancy: 0.1401

The information below is about IL_8C3A_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6UZ7|1|5|C|729
6UZ7|1|5|U|730
6UZ7|1|5|G|731
6UZ7|1|5|A|732
6UZ7|1|5|U|733
6UZ7|1|5|G|734
*
6UZ7|1|5|C|739
6UZ7|1|5|G|740
6UZ7|1|5|G|741
6UZ7|1|5|A|742
6UZ7|1|5|U|743
6UZ7|1|5|G|744

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain AL

60S ribosomal protein L13

Chain Ba

RPL28

Chain Bo

60S ribosomal protein L44