IL_6UZ7_109

3D structure

PDB id

6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

K.lactis 80S ribosome with p/PE tRNA and eIF5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6UZ7_109 not in the Motif Atlas

Geometric match to IL_4WF9_024

Geometric discrepancy: 0.0834

The information below is about IL_4WF9_024

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.3

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

26

Unit IDs

6UZ7|1|5|U|805
6UZ7|1|5|G|806
6UZ7|1|5|A|807
6UZ7|1|5|A|808
6UZ7|1|5|G|809
*
6UZ7|1|5|U|826
6UZ7|1|5|G|827
6UZ7|1|5|G|828
6UZ7|1|5|A|829
6UZ7|1|5|G|830

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain AA

KLLA0D16027p

Chain AR

KLLA0E12453p

Chain Bp

KLLA0E05941p