IL_6UZ7_140

3D structure

PDB id

6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

K.lactis 80S ribosome with p/PE tRNA and eIF5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGUU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6UZ7_140 not in the Motif Atlas

Geometric match to IL_4V9F_050

Geometric discrepancy: 0.1436

The information below is about IL_4V9F_050

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.3

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

36

Unit IDs

6UZ7|1|5|G|1463
6UZ7|1|5|G|1464
6UZ7|1|5|U|1465
6UZ7|1|5|U|1466
*
6UZ7|1|5|A|1804
6UZ7|1|5|C|1805

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain AX

60S ribosomal protein L25

Chain Bg

KLLA0C08371p

Chain Bj

Ribosomal protein L37

Chain Bl

60S ribosomal protein L39