IL_6UZ7_186

3D structure

PDB id

6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

K.lactis 80S ribosome with p/PE tRNA and eIF5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UCAAG*CGACA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6UZ7_186 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.141

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6UZ7|1|5|U|2803
6UZ7|1|5|C|2804
6UZ7|1|5|A|2805
6UZ7|1|5|A|2806
6UZ7|1|5|G|2807
*
6UZ7|1|5|C|2817
6UZ7|1|5|G|2818
6UZ7|1|5|A|2819
6UZ7|1|5|C|2820
6UZ7|1|5|A|2821

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain 1

KLLA0F23265p

Chain AI

KLLA0D05643p

Chain Bm

Ubiquitin fusion protein