IL_6UZ7_191

3D structure

PDB id

6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

K.lactis 80S ribosome with p/PE tRNA and eIF5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UA*UAAG

Length

6 nucleotides

Bulged bases

6UZ7|1|5|A|2879

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6UZ7_191 not in the Motif Atlas

Homologous match to IL_5TBW_111

Geometric discrepancy: 0.1242

The information below is about IL_5TBW_111

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_95601.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

6UZ7|1|5|U|2859
6UZ7|1|5|A|2860
*
6UZ7|1|5|U|2877
6UZ7|1|5|A|2878
6UZ7|1|5|A|2879
6UZ7|1|5|G|2880

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain AH

KLLA0F04499p

Chain AO

KLLA0F04675p

Chain Bm

Ubiquitin fusion protein