IL_6UZ7_236

3D structure

PDB id

6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

K.lactis 80S ribosome with p/PE tRNA and eIF5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUG*UAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6UZ7_236 not in the Motif Atlas

Geometric match to IL_5UNE_006

Geometric discrepancy: 0.2714

The information below is about IL_5UNE_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_38565.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

6UZ7|1|5|C|512
6UZ7|1|5|U|513
6UZ7|1|5|G|514
*
6UZ7|1|5|U|521
6UZ7|1|5|A|522
6UZ7|1|5|G|523

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain AS

60S ribosomal protein L20