IL_6UZ7_261

3D structure

PDB id

6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

K.lactis 80S ribosome with p/PE tRNA and eIF5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AAUA*UUCU

Length

8 nucleotides

Bulged bases

6UZ7|1|2|A|1345, 6UZ7|1|2|U|1346

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6UZ7_261 not in the Motif Atlas

Homologous match to IL_8CRE_481

Geometric discrepancy: 0.2556

The information below is about IL_8CRE_481

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_78800.3

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

4

Unit IDs

6UZ7|1|2|A|1344
6UZ7|1|2|A|1345
6UZ7|1|2|U|1346
6UZ7|1|2|A|1347
*
6UZ7|1|2|U|1375
6UZ7|1|2|U|1376
6UZ7|1|2|C|1377
6UZ7|1|2|U|1378

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Q

40S ribosomal protein S16

Chain U

KLLA0F25542p