IL_6UZ7_264

3D structure

PDB id

6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

K.lactis 80S ribosome with p/PE tRNA and eIF5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGGAU*AGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6UZ7_264 not in the Motif Atlas

Homologous match to IL_8CRE_476

Geometric discrepancy: 0.1554

The information below is about IL_8CRE_476

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.3

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

26

Unit IDs

6UZ7|1|2|A|1676
6UZ7|1|2|G|1677
6UZ7|1|2|G|1678
6UZ7|1|2|A|1679
6UZ7|1|2|U|1680
*
6UZ7|1|2|A|1717
6UZ7|1|2|G|1718
6UZ7|1|2|A|1719
6UZ7|1|2|A|1720
6UZ7|1|2|U|1721

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AW

60S ribosomal protein L24

Chain G

40S ribosomal protein S6

Chain I

40S ribosomal protein S8