IL_6V39_011
3D structure
- PDB id
- 6V39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.04 Å
Loop
- Sequence
- GAAC*GAGUGAAAUAGAUC
- Length
- 18 nucleotides
- Bulged bases
- 6V39|1|AN1|U|503, 6V39|1|AN1|U|507
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6V39_011 not in the Motif Atlas
- Geometric match to IL_5J7L_255
- Geometric discrepancy: 0.0988
- The information below is about IL_5J7L_255
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_81516.2
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 6
Unit IDs
6V39|1|AN1|G|480
6V39|1|AN1|A|481
6V39|1|AN1|A|482
6V39|1|AN1|C|483
*
6V39|1|AN1|G|495
6V39|1|AN1|A|496
6V39|1|AN1|G|497
6V39|1|AN1|U|498
6V39|1|AN1|G|499
6V39|1|AN1|A|500
6V39|1|AN1|A|501
6V39|1|AN1|A|502
6V39|1|AN1|U|503
6V39|1|AN1|A|504
6V39|1|AN1|G|505
6V39|1|AN1|A|506
6V39|1|AN1|U|507
6V39|1|AN1|C|508
Current chains
- Chain AN1
- 23s ribosomal RNA
Nearby chains
- Chain R
- 50S ribosomal protein L22
- Chain T
- 50S ribosomal protein L24
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