IL_6V39_018

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GC*GAC

Length

5 nucleotides

Bulged bases

6V39|1|AN1|A|762

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V39_018 not in the Motif Atlas

Geometric match to IL_4V9F_025

Geometric discrepancy: 0.0812

The information below is about IL_4V9F_025

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

6V39|1|AN1|G|695
6V39|1|AN1|C|696
*
6V39|1|AN1|G|761
6V39|1|AN1|A|762
6V39|1|AN1|C|763

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2