IL_6V39_032

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GCUAG*CAAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V39_032 not in the Motif Atlas

Homologous match to IL_5J7L_274

Geometric discrepancy: 0.3675

The information below is about IL_5J7L_274

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6V39|1|AN1|G|873
6V39|1|AN1|C|874
6V39|1|AN1|U|875
6V39|1|AN1|A|876
6V39|1|AN1|G|877
*
6V39|1|AN1|C|896
6V39|1|AN1|A|897
6V39|1|AN1|A|898
6V39|1|AN1|A|899
6V39|1|AN1|C|900

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains