IL_6V39_038

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

UUAAGUG*CUAAAA

Length

13 nucleotides

Bulged bases

6V39|1|AN1|A|1139, 6V39|1|AN1|A|1141

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V39_038 not in the Motif Atlas

Homologous match to IL_7RQB_039

Geometric discrepancy: 0.0859

The information below is about IL_7RQB_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57188.3

Basepair signature

cWW-cSH-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

6V39|1|AN1|U|1015
6V39|1|AN1|U|1016
6V39|1|AN1|A|1017
6V39|1|AN1|A|1018
6V39|1|AN1|G|1019
6V39|1|AN1|U|1020
6V39|1|AN1|G|1021
*
6V39|1|AN1|C|1137
6V39|1|AN1|U|1138
6V39|1|AN1|A|1139
6V39|1|AN1|A|1140
6V39|1|AN1|A|1141
6V39|1|AN1|A|1142

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L36

Chain G

50S ribosomal protein L6

Chain I

50S ribosomal protein L13