IL_6V39_054

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CGAUG*CUAAG

Length

10 nucleotides

Bulged bases

6V39|1|AN1|U|1415

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V39_054 not in the Motif Atlas

Homologous match to IL_5J7L_295

Geometric discrepancy: 0.3161

The information below is about IL_5J7L_295

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

6V39|1|AN1|C|1412
6V39|1|AN1|G|1413
6V39|1|AN1|A|1414
6V39|1|AN1|U|1415
6V39|1|AN1|G|1416
*
6V39|1|AN1|C|1575
6V39|1|AN1|U|1576
6V39|1|AN1|A|1577
6V39|1|AN1|A|1578
6V39|1|AN1|G|1579

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains