IL_6V39_058

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

AUGUAG*UGAGAU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V39_058 not in the Motif Atlas

Geometric match to IL_3LQX_002

Geometric discrepancy: 0.3616

The information below is about IL_3LQX_002

Detailed Annotation

tSH-tHW-tHS-cWW

Broad Annotation

No text annotation

Motif group

IL_76308.6

Basepair signature

cWW-tSH-tHW-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6V39|1|AN1|A|1468
6V39|1|AN1|U|1469
6V39|1|AN1|G|1470
6V39|1|AN1|U|1471
6V39|1|AN1|A|1472
6V39|1|AN1|G|1473
*
6V39|1|AN1|U|1509
6V39|1|AN1|G|1510
6V39|1|AN1|A|1511
6V39|1|AN1|G|1512
6V39|1|AN1|A|1513
6V39|1|AN1|U|1514

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains