IL_6V39_065
3D structure
- PDB id
- 6V39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.04 Å
Loop
- Sequence
- CGUAAC*GGAGAAG
- Length
- 13 nucleotides
- Bulged bases
- 6V39|1|AN1|G|1697
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6V39_065 not in the Motif Atlas
- Homologous match to IL_7RQB_068
- Geometric discrepancy: 0.1061
- The information below is about IL_7RQB_068
- Detailed Annotation
- tSH-tSH-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_65969.2
- Basepair signature
- cWW-tSH-tSH-tHH-tHS-cWW
- Number of instances in this motif group
- 8
Unit IDs
6V39|1|AN1|C|1684
6V39|1|AN1|G|1685
6V39|1|AN1|U|1686
6V39|1|AN1|A|1687
6V39|1|AN1|A|1688
6V39|1|AN1|C|1689
*
6V39|1|AN1|G|1694
6V39|1|AN1|G|1695
6V39|1|AN1|A|1696
6V39|1|AN1|G|1697
6V39|1|AN1|A|1698
6V39|1|AN1|A|1699
6V39|1|AN1|G|1700
Current chains
- Chain AN1
- 23s ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain sN1
- Small subunit ribosomal RNA; SSU rRNA
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