IL_6V39_088

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

6V39|1|AN1|U|2199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V39_088 not in the Motif Atlas

Homologous match to IL_5J7L_331

Geometric discrepancy: 0.3697

The information below is about IL_5J7L_331

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6V39|1|AN1|C|2198
6V39|1|AN1|U|2199
6V39|1|AN1|G|2200
*
6V39|1|AN1|C|2216
6V39|1|AN1|G|2217

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain W

50S ribosomal protein L28