IL_6V39_106

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CU*AUG

Length

5 nucleotides

Bulged bases

6V39|1|AN1|U|2796

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V39_106 not in the Motif Atlas

Geometric match to IL_5TBW_050

Geometric discrepancy: 0.2091

The information below is about IL_5TBW_050

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6V39|1|AN1|C|2791
6V39|1|AN1|U|2792
*
6V39|1|AN1|A|2795
6V39|1|AN1|U|2796
6V39|1|AN1|G|2797

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains