IL_6V39_109

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GAUG*CUGAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V39_109 not in the Motif Atlas

Homologous match to IL_5J7L_353

Geometric discrepancy: 0.1956

The information below is about IL_5J7L_353

Detailed Annotation

Multiple bulged bases with non-canonical cWW

Broad Annotation

Multiple bulged bases with non-canonical cWW

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

6V39|1|AN1|G|2839
6V39|1|AN1|A|2840
6V39|1|AN1|U|2841
6V39|1|AN1|G|2842
*
6V39|1|AN1|C|2866
6V39|1|AN1|U|2867
6V39|1|AN1|G|2868
6V39|1|AN1|A|2869
6V39|1|AN1|C|2870

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain M

50S ribosomal protein L17

Chain O

50S ribosomal protein L19