IL_6V39_118

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CGAG*CG

Length

6 nucleotides

Bulged bases

6V39|1|sN1|G|66, 6V39|1|sN1|A|67

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V39_118 not in the Motif Atlas

Homologous match to IL_5J7L_005

Geometric discrepancy: 0.1463

The information below is about IL_5J7L_005

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.4

Basepair signature

cWW-cWW

Number of instances in this motif group

30

Unit IDs

6V39|1|sN1|C|65
6V39|1|sN1|G|66
6V39|1|sN1|A|67
6V39|1|sN1|G|68
*
6V39|1|sN1|C|99
6V39|1|sN1|G|100

Current chains

Chain sN1

16s Ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20