IL_6V39_122

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GGG*CGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V39_122 not in the Motif Atlas

Homologous match to IL_5J7L_011

Geometric discrepancy: 0.1195

The information below is about IL_5J7L_011

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

6V39|1|sN1|G|140
6V39|1|sN1|G|141
6V39|1|sN1|G|142
*
6V39|1|sN1|C|172
6V39|1|sN1|G|173
6V39|1|sN1|C|174

Current chains

Chain sN1

16s Ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20