IL_6V39_131

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V39_131 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.2636

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

6V39|1|sN1|U|405
6V39|1|sN1|G|406
6V39|1|sN1|A|407
6V39|1|sN1|A|408
6V39|1|sN1|G|409
6V39|1|sN1|A|410
6V39|1|sN1|A|411
6V39|1|sN1|G|412
*
6V39|1|sN1|U|423
6V39|1|sN1|G|424
6V39|1|sN1|U|425
6V39|1|sN1|A|426
6V39|1|sN1|A|427
6V39|1|sN1|A|428
6V39|1|sN1|G|429

Current chains

Chain sN1

16s Ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4