IL_6V39_133

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

6V39|1|sN1|U|482

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V39_133 not in the Motif Atlas

Homologous match to IL_5J7L_022

Geometric discrepancy: 0.148

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6V39|1|sN1|G|442
6V39|1|sN1|G|443
6V39|1|sN1|A|444
6V39|1|sN1|G|445
6V39|1|sN1|G|446
*
6V39|1|sN1|C|480
6V39|1|sN1|G|481
6V39|1|sN1|U|482
6V39|1|sN1|U|483
6V39|1|sN1|A|484
6V39|1|sN1|C|485

Current chains

Chain sN1

16s Ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4

Chain p

30S ribosomal protein S16