3D structure

PDB id
6V39 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.04 Å

Loop

Sequence
CAAAC*GGUAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6V39_149 not in the Motif Atlas
Homologous match to IL_5J7L_037
Geometric discrepancy: 0.117
The information below is about IL_5J7L_037
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_17136.7
Basepair signature
cWW-tSH-tHW-tHS-cWW
Number of instances in this motif group
14

Unit IDs

6V39|1|sN1|C|776
6V39|1|sN1|A|777
6V39|1|sN1|A|778
6V39|1|sN1|A|779
6V39|1|sN1|C|780
*
6V39|1|sN1|G|796
6V39|1|sN1|G|797
6V39|1|sN1|U|798
6V39|1|sN1|A|799
6V39|1|sN1|G|800

Current chains

Chain sN1
16s Ribosomal RNA

Nearby chains

Chain AN1
Large subunit ribosomal RNA; LSU rRNA
Chain k
30S ribosomal protein S11
Chain u
30S ribosomal protein S21

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