IL_6V39_149
3D structure
- PDB id
- 6V39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.04 Å
Loop
- Sequence
- CAAAC*GGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6V39_149 not in the Motif Atlas
- Homologous match to IL_5J7L_037
- Geometric discrepancy: 0.117
- The information below is about IL_5J7L_037
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.7
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 14
Unit IDs
6V39|1|sN1|C|776
6V39|1|sN1|A|777
6V39|1|sN1|A|778
6V39|1|sN1|A|779
6V39|1|sN1|C|780
*
6V39|1|sN1|G|796
6V39|1|sN1|G|797
6V39|1|sN1|U|798
6V39|1|sN1|A|799
6V39|1|sN1|G|800
Current chains
- Chain sN1
- 16s Ribosomal RNA
Nearby chains
- Chain AN1
- Large subunit ribosomal RNA; LSU rRNA
- Chain k
- 30S ribosomal protein S11
- Chain u
- 30S ribosomal protein S21
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