3D structure

PDB id
6V39 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.04 Å

Loop

Sequence
GUG*CC
Length
5 nucleotides
Bulged bases
6V39|1|sN1|U|1046
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6V39_159 not in the Motif Atlas
Homologous match to IL_4LFB_042
Geometric discrepancy: 0.1454
The information below is about IL_4LFB_042
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_89505.4
Basepair signature
cWW-L-cWW
Number of instances in this motif group
117

Unit IDs

6V39|1|sN1|G|1045
6V39|1|sN1|U|1046
6V39|1|sN1|G|1047
*
6V39|1|sN1|C|1205
6V39|1|sN1|C|1206

Current chains

Chain sN1
16s Ribosomal RNA

Nearby chains

Chain n
30S ribosomal protein S14

Coloring options:


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