IL_6V39_193

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GUGUAGGAUAGGUGGGAGGCUUUGAAGC*GUGGAGCCGUCCUUGAAAUACCACCC

Length

54 nucleotides

Bulged bases

6V39|1|AN1|U|2107, 6V39|1|AN1|U|2114, 6V39|1|AN1|A|2122, 6V39|1|AN1|U|2126, 6V39|1|AN1|U|2128, 6V39|1|AN1|U|2163, 6V39|1|AN1|U|2168, 6V39|1|AN1|C|2174

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6V39|1|AN1|G|2106
6V39|1|AN1|U|2107
6V39|1|AN1|G|2108
6V39|1|AN1|U|2109
6V39|1|AN1|A|2110
6V39|1|AN1|G|2111
6V39|1|AN1|G|2112
6V39|1|AN1|A|2113
6V39|1|AN1|U|2114
6V39|1|AN1|A|2115
6V39|1|AN1|G|2116
6V39|1|AN1|G|2117
6V39|1|AN1|U|2118
6V39|1|AN1|G|2119
6V39|1|AN1|G|2120
6V39|1|AN1|G|2121
6V39|1|AN1|A|2122
6V39|1|AN1|G|2123
6V39|1|AN1|G|2124
6V39|1|AN1|C|2125
6V39|1|AN1|U|2126
6V39|1|AN1|U|2127
6V39|1|AN1|U|2128
6V39|1|AN1|G|2129
6V39|1|AN1|A|2130
6V39|1|AN1|A|2131
6V39|1|AN1|G|2132
6V39|1|AN1|C|2133
*
6V39|1|AN1|G|2150
6V39|1|AN1|U|2151
6V39|1|AN1|G|2152
6V39|1|AN1|G|2153
6V39|1|AN1|A|2154
6V39|1|AN1|G|2155
6V39|1|AN1|C|2156
6V39|1|AN1|C|2157
6V39|1|AN1|G|2158
6V39|1|AN1|U|2159
6V39|1|AN1|C|2160
6V39|1|AN1|C|2161
6V39|1|AN1|U|2162
6V39|1|AN1|U|2163
6V39|1|AN1|G|2164
6V39|1|AN1|A|2165
6V39|1|AN1|A|2166
6V39|1|AN1|A|2167
6V39|1|AN1|U|2168
6V39|1|AN1|A|2169
6V39|1|AN1|C|2170
6V39|1|AN1|C|2171
6V39|1|AN1|A|2172
6V39|1|AN1|C|2173
6V39|1|AN1|C|2174
6V39|1|AN1|C|2175

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains