IL_6V39_204

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GUUGCUAC*GAUGCUAAUC

Length

18 nucleotides

Bulged bases

6V39|1|sN1|U|1254, 6V39|1|sN1|A|1277, 6V39|1|sN1|U|1278

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6V39|1|sN1|G|1252
6V39|1|sN1|U|1253
6V39|1|sN1|U|1254
6V39|1|sN1|G|1255
6V39|1|sN1|C|1256
6V39|1|sN1|U|1257
6V39|1|sN1|A|1258
6V39|1|sN1|C|1259
*
6V39|1|sN1|G|1270
6V39|1|sN1|A|1271
6V39|1|sN1|U|1272
6V39|1|sN1|G|1273
6V39|1|sN1|C|1274
6V39|1|sN1|U|1275
6V39|1|sN1|A|1276
6V39|1|sN1|A|1277
6V39|1|sN1|U|1278
6V39|1|sN1|C|1279

Current chains

Chain sN1

16s Ribosomal RNA

Nearby chains

Chain c

30S ribosomal protein S3

Chain j

30S ribosomal protein S10

Chain n

30S ribosomal protein S14