3D structure

PDB id
6V39 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.04 Å

Loop

Sequence
GUUGCUAC*GAUGCUAAUC
Length
18 nucleotides
Bulged bases
6V39|1|sN1|U|1254, 6V39|1|sN1|A|1277, 6V39|1|sN1|U|1278
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6V39|1|sN1|G|1252
6V39|1|sN1|U|1253
6V39|1|sN1|U|1254
6V39|1|sN1|G|1255
6V39|1|sN1|C|1256
6V39|1|sN1|U|1257
6V39|1|sN1|A|1258
6V39|1|sN1|C|1259
*
6V39|1|sN1|G|1270
6V39|1|sN1|A|1271
6V39|1|sN1|U|1272
6V39|1|sN1|G|1273
6V39|1|sN1|C|1274
6V39|1|sN1|U|1275
6V39|1|sN1|A|1276
6V39|1|sN1|A|1277
6V39|1|sN1|U|1278
6V39|1|sN1|C|1279

Current chains

Chain sN1
16s Ribosomal RNA

Nearby chains

Chain c
30S ribosomal protein S3
Chain j
30S ribosomal protein S10
Chain n
30S ribosomal protein S14

Coloring options:

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