IL_6V39_206

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CUAGC*GCGG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V39_206 not in the Motif Atlas

Geometric match to IL_7A0S_058

Geometric discrepancy: 0.3949

The information below is about IL_7A0S_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48444.6

Basepair signature

cWW-L-R-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6V39|1|sN1|C|1436
6V39|1|sN1|U|1437
6V39|1|sN1|A|1438
6V39|1|sN1|G|1439
6V39|1|sN1|C|1440
*
6V39|1|sN1|G|1456
6V39|1|sN1|C|1457
6V39|1|sN1|G|1458
6V39|1|sN1|G|1459

Current chains

Chain sN1

16s Ribosomal RNA

Nearby chains

Chain AN1

Large subunit ribosomal RNA; LSU rRNA

Chain O

50S ribosomal protein L19

Chain t

30S ribosomal protein S20