3D structure

PDB id
6V3A (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
2.82 Å

Loop

Sequence
UUAAGUG*CUAAAA
Length
13 nucleotides
Bulged bases
6V3A|1|AN1|A|1139, 6V3A|1|AN1|A|1141
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6V3A_037 not in the Motif Atlas
Geometric match to IL_7RQB_039
Geometric discrepancy: 0.0809
The information below is about IL_7RQB_039
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_57188.3
Basepair signature
cWW-cSH-tWW-L-tWW-cWW-cSH
Number of instances in this motif group
5

Unit IDs

6V3A|1|AN1|U|1015
6V3A|1|AN1|U|1016
6V3A|1|AN1|A|1017
6V3A|1|AN1|A|1018
6V3A|1|AN1|G|1019
6V3A|1|AN1|U|1020
6V3A|1|AN1|G|1021
*
6V3A|1|AN1|C|1137
6V3A|1|AN1|U|1138
6V3A|1|AN1|A|1139
6V3A|1|AN1|A|1140
6V3A|1|AN1|A|1141
6V3A|1|AN1|A|1142

Current chains

Chain AN1
23s ribosomal RNA

Nearby chains

Chain 3
50S ribosomal protein L36
Chain G
50S ribosomal protein L6
Chain I
50S ribosomal protein L13

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