3D structure

PDB id
6V3A (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
2.82 Å

Loop

Sequence
AUGUAG*UGAGAU
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6V3A_057 not in the Motif Atlas
Geometric match to IL_3LQX_002
Geometric discrepancy: 0.2914
The information below is about IL_3LQX_002
Detailed Annotation
tSH-tHW-tHS-cWW
Broad Annotation
No text annotation
Motif group
IL_76308.6
Basepair signature
cWW-tSH-tHW-tHS-cWW-cWW
Number of instances in this motif group
5

Unit IDs

6V3A|1|AN1|A|1468
6V3A|1|AN1|U|1469
6V3A|1|AN1|G|1470
6V3A|1|AN1|U|1471
6V3A|1|AN1|A|1472
6V3A|1|AN1|G|1473
*
6V3A|1|AN1|U|1509
6V3A|1|AN1|G|1510
6V3A|1|AN1|A|1511
6V3A|1|AN1|G|1512
6V3A|1|AN1|A|1513
6V3A|1|AN1|U|1514

Current chains

Chain AN1
23s ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0651 s