IL_6V3A_064

3D structure

PDB id

6V3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6V3A|1|AN1|G|1697

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V3A_064 not in the Motif Atlas

Homologous match to IL_5J7L_308

Geometric discrepancy: 0.0949

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6V3A|1|AN1|C|1684
6V3A|1|AN1|G|1685
6V3A|1|AN1|U|1686
6V3A|1|AN1|A|1687
6V3A|1|AN1|A|1688
6V3A|1|AN1|C|1689
*
6V3A|1|AN1|G|1694
6V3A|1|AN1|G|1695
6V3A|1|AN1|A|1696
6V3A|1|AN1|G|1697
6V3A|1|AN1|A|1698
6V3A|1|AN1|A|1699
6V3A|1|AN1|G|1700

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain sN1

Small subunit ribosomal RNA; SSU rRNA