3D structure

PDB id
6V3A (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
2.82 Å

Loop

Sequence
GU(7MG)A*UCU
Length
7 nucleotides
Bulged bases
6V3A|1|AN1|U|2064
QA status
Modified nucleotides: 7MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6V3A_077 not in the Motif Atlas
Geometric match to IL_5C5W_002
Geometric discrepancy: 0.1511
The information below is about IL_5C5W_002
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

6V3A|1|AN1|G|2063
6V3A|1|AN1|U|2064
6V3A|1|AN1|7MG|2065
6V3A|1|AN1|A|2066
*
6V3A|1|AN1|U|2437
6V3A|1|AN1|C|2438
6V3A|1|AN1|U|2439

Current chains

Chain AN1
23s ribosomal RNA

Nearby chains

Chain E
50S ribosomal protein L4
Chain K
50S ribosomal protein L15

Coloring options:


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