IL_6V3A_088

3D structure

PDB id

6V3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V3A_088 not in the Motif Atlas

Homologous match to IL_7RQB_089

Geometric discrepancy: 0.0823

The information below is about IL_7RQB_089

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.10

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

33

Unit IDs

6V3A|1|AN1|C|2346
6V3A|1|AN1|G|2347
6V3A|1|AN1|A|2348
6V3A|1|AN1|G|2349
*
6V3A|1|AN1|C|2360
6V3A|1|AN1|G|2361
6V3A|1|AN1|A|2362
6V3A|1|AN1|G|2363

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L35

Chain V

50S ribosomal protein L27