3D structure

PDB id
6V3A (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
2.82 Å

Loop

Sequence
GG*CAC
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6V3A_091 not in the Motif Atlas
Geometric match to IL_4WF9_090
Geometric discrepancy: 0.1139
The information below is about IL_4WF9_090
Detailed Annotation
Major groove platform
Broad Annotation
No text annotation
Motif group
IL_48076.6
Basepair signature
cWW-cSH-cWW
Number of instances in this motif group
41

Unit IDs

6V3A|1|AN1|G|2450
6V3A|1|AN1|G|2451
*
6V3A|1|AN1|C|2492
6V3A|1|AN1|A|2493
6V3A|1|AN1|C|2494

Current chains

Chain AN1
23s ribosomal RNA

Nearby chains

Chain D
50S ribosomal protein L3
Chain L
50S ribosomal protein L16

Coloring options:


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