IL_6V3A_093

3D structure

PDB id

6V3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V3A_093 not in the Motif Atlas

Geometric match to IL_7RQB_094

Geometric discrepancy: 0.1342

The information below is about IL_7RQB_094

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform; mini C-loop

Motif group

IL_92788.2

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

14

Unit IDs

6V3A|1|AN1|A|2455
6V3A|1|AN1|U|2456
6V3A|1|AN1|A|2457
*
6V3A|1|AN1|U|2485
6V3A|1|AN1|G|2486
6V3A|1|AN1|U|2487
6V3A|1|AN1|U|2488
6V3A|1|AN1|U|2489

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L16