IL_6V3A_094

3D structure

PDB id

6V3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V3A_094 not in the Motif Atlas

Homologous match to IL_5J7L_338

Geometric discrepancy: 0.1568

The information below is about IL_5J7L_338

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6V3A|1|AN1|C|2462
6V3A|1|AN1|C|2463
6V3A|1|AN1|A|2464
6V3A|1|AN1|A|2465
6V3A|1|AN1|G|2466
*
6V3A|1|AN1|C|2476
6V3A|1|AN1|G|2477
6V3A|1|AN1|A|2478
6V3A|1|AN1|C|2479
6V3A|1|AN1|G|2480

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L36

Chain L

50S ribosomal protein L16